PBK models data formats

Data tables:

PBK models are specified as kinetic model instances that contain parameter specifications of built in kinetic models.

PBK model data format

The PBK model data format specifies PBK model definitions and parameters.

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Kinetic model instances.

Accepted table names: KineticModelInstances, KineticModelInstance.

Table 333 Table definition for Kinetic model instances.
Name	Type	Description	Aliases	Required
idModelInstance	AlphaNumeric (50)	Unique identification code of the kinetic model instance.	idModelInstance, Id, Code	Yes
idModelDefinition	KineticModelType	Identifier of the kinetic model definition for which this is an instance.	idModelDefinition, ModelDefinition	Yes
Species	AlphaNumeric (50)	The species on which the experiment was performed.	System, TestSystem, Species	Yes
Substances	AlphaNumeric (150)	Code or comma separated list of the codes of the substances. Unique identification code of substance, Default: valid for all substances. Should be omitted for parameters in the class Physiological	idSubstance, idSubstances, SubstanceId, SubstanceCode, SubstanceCodes, Substance, Substances	No
Reference	AlphaNumeric (100)	Reference or author.	References	No
Name	AlphaNumeric (100)	Name of the kinetic model instance.	Name	No
Description	AlphaNumeric (200)	Additional description of the kinetic model instance.	Description	No

Kinetic model parameters

Accepted table names: KineticModelInstanceParameters, KineticModelInstanceParameter.

Table 334 Table definition for Kinetic model instance parameters .
Name	Type	Description	Aliases	Required
idModelInstance	AlphaNumeric (50)	Unique identification code of the kinetic model instance to which this parameter belongs	Id, Code	Yes
Parameter	AlphaNumeric (50)	Name of the parameter in the kinetic model.		Yes
Description	AlphaNumeric (200)	Description of or reference for the parameter values in the kinetic model.		No
Value	Numeric	Mean.	MEAN, mean	Yes
DistributionType	ProbabilityDistribution	Distribution.	DistributionType, Distribution	No
CvVariability	Numeric	Variability.		No
CvUncertainty	Numeric	Uncertainty.		No