Kinetic models data formats
- Data tables:
Absorption factors
Kinetic model instances
Kinetic model instance parameters
Kinetic models are specified as kinetic model instances that contain parameter specifications of built in kinetic models or as simple absorption factors.
Download empty dataset template:
Kinetic model instances
Kinetic model instances.
Accepted table names: KineticModelInstances, KineticModelInstance.
| Name | Type | Description | Aliases | Required |
|---|---|---|---|---|
idModelInstance |
AlphaNumeric (50) |
Unique identification code of the kinetic model instance. |
idModelInstance, Id, Code |
Yes |
idModelDefinition |
KineticModelType |
Identifier of the kinetic model definition for which this is an instance. |
idModelDefinition, ModelDefinition |
Yes |
idTestSystem |
AlphaNumeric (50) |
The species on which the experiment was performed. |
System, TestSystem |
Yes |
Substances |
AlphaNumeric (150) |
Code or comma separated list of the codes of the substances. Unique identification code of substance, Default: valid for all substances. Should be omitted for parameters in the class Physiological |
idSubstance, idSubstances, SubstanceId, SubstanceCode, SubstanceCodes, Substance, Substances |
No |
Reference |
AlphaNumeric (100) |
Reference or author. |
References |
No |
Name |
AlphaNumeric (100) |
Name of the kinetic model instance. |
Name |
No |
Description |
AlphaNumeric (200) |
Additional description of the kinetic model instance. |
Description |
No |
Kinetic model instance parameters
Kinetic model parameters
Accepted table names: KineticModelInstanceParameters, KineticModelInstanceParameter.
| Name | Type | Description | Aliases | Required |
|---|---|---|---|---|
idModelInstance |
AlphaNumeric (50) |
Unique identification code of the kinetic model instance to which this parameter belongs |
Id, Code |
Yes |
Parameter |
AlphaNumeric (50) |
Name of the parameter in the kinetic model. |
Yes |
|
Description |
AlphaNumeric (200) |
Description of or reference for the parameter values in the kinetic model. |
No |
|
Value |
Numeric |
Mean. |
MEAN, mean |
Yes |
DistributionType |
AlphaNumeric (100) |
Distribution. |
DistributionType, Distribution |
No |
CvVariability |
Numeric |
Variability. |
No |
|
CvUncertainty |
Numeric |
Uncertainty. |
No |
Kinetic model absorption factors
Kinetic absorption factors
Accepted table names: KineticAbsorptionFactors, KineticAbsorptionFactor, AbsorptionFactors, AbsorptionFactor.
| Name | Type | Description | Aliases | Required |
|---|---|---|---|---|
idCompound |
AlphaNumeric (50) |
code of substance (must correspond to values in id column of Substances table) |
idSubstance, SubstanceId, SubstanceCode, Substance |
No |
Route |
ExposureRouteType | Non-dietary route or pathway, use ‘Oral’, ‘Dermal’, or ‘Inhalation’ to specify the route. |
Route, Pathway |
Yes |
AbsorptionFactor |
Numeric |
absorption factor value |
AbsorptionFactor, Factor |
Yes |