Embedded model specifications
This section serves as a reference, providing the technical specifications for using/linking the PBK models embedded in MCRA.
EuroMix Bisphenols PBPK model (v1)
EuroMix Bisphenols PBPK model by Karrer et al. (23 July 2018).
Model aliases: EuroMix_Bisphenols_PBPK_model_V1, PBPKModel_BPA.
| Id | Description | Unit |
|---|---|---|
Oral |
Oral exposure |
nmoles |
Dermal |
Dermal exposure |
nmoles |
Inhalation |
Inhalation exposure |
nmoles |
| Id | Description | ScalingFactor | MultiplicationFactor | Unit |
|---|---|---|---|---|
CPlasmaOut |
Concentration in plasma |
nmol/L |
||
CGonadOut |
Concentration in gonads |
nmol/L |
||
AurinebpaOut |
Cumulative excretion of BPA in urine |
nmoles |
||
AurinegOut |
Cumulative excretion of BPA-g in urine |
nmoles |
||
AurineTotalOut |
Cumulative excretion of BPA and metabolites in urine |
nmoles |
| Id | Description | Default | Unit | Type |
|---|---|---|---|---|
BW |
Bodyweight |
kg |
BodyWeight |
|
QCC |
Cardiac output |
L/min |
Physiological |
|
QgonadC |
Fractional blood flow to gonads |
Physiological |
||
QliverC |
Fractional blood flow to liver |
Physiological |
||
QfatC |
Fractional blood flow to fat tissue |
Physiological |
||
QbrainC |
Fractional blood flow to brain |
Physiological |
||
QskinC |
Fractional blood flow to skin |
Physiological |
||
QmuscleC |
Fractional blood flow to gonads |
Physiological |
||
VplasmaC |
Fractional volume of plasma |
Physiological |
||
VfatC |
Fractional volume of fat tissue |
Physiological |
||
VliverC |
Fractional volume of liver tissue |
Physiological |
||
VbrainC |
Fractional volume of brain tissue |
Physiological |
||
VskinC |
Fractional volume of skin tissue |
Physiological |
||
VgonadC |
Fractional volume of gonads |
Physiological |
||
VmuscleC |
Fractional volume of muscle tissue |
Physiological |
||
VrichC |
Fractional volume of richly perfused tissue |
Physiological |
||
VbodygC |
Distribution volume of BPA-g |
Physiological |
||
VbodysC |
Distribution volume of BPA-s |
Other |
||
MW |
Molecular weight |
g/mol |
MolecularWeight |
|
pliver |
Partition coefficient liver to blood |
PartitionCoefficient |
||
pfat |
Partition coefficient fat to blood |
PartitionCoefficient |
||
pslow |
Partition coefficient slowly perfused tissue to blood |
PartitionCoefficient |
||
prich |
Partition coefficient richly perfused tissue to blood |
PartitionCoefficient |
||
pgonad |
Partition coefficient gonads to blood |
PartitionCoefficient |
||
pbrain |
Partition coefficient brain to blood |
PartitionCoefficient |
||
pskin |
Partition coefficient skin to blood |
PartitionCoefficient |
||
geC |
Gastric emptying |
1/h/kg bw^-0.25 |
Physicochemical |
|
k0C |
Oral uptake from the stomach into the liver |
1/h/kg bw^-0.25 |
Physicochemical |
|
k1C |
Oral uptake from the small intestine into the liver |
1/h/kg bw^-0.25 |
Physicochemical |
|
k4C |
Fecal elimination from small intestine after oral administration |
1/h/kg bw^-0.25 |
Physicochemical |
|
kGIingC |
Transport of glucuronide from enterocytes into serum |
1/h/kg bw^-0.25 |
Physicochemical |
|
kGIinsC |
Transport of sulfate from enterocytes into serum |
1/h/kg bw^-0.25 |
Physicochemical |
|
kmgutg |
Km of Glucuronidation in the gut |
nM |
Physicochemical |
|
vmaxgutgC |
Vmax of Glucuronidation in the gut |
nmol/h/kg bw |
Physicochemical |
|
fgutg |
Correction factor of glucuronidation in the gut |
Physicochemical |
||
kmguts |
Km of Sulfation in the gut |
nM |
Physicochemical |
|
vmaxgutsC |
Vmax of Sulfation in the gut |
nmol/h/kg bw |
Physicochemical |
|
fguts |
Correction factor of sulfation in the gut |
Physicochemical |
||
met1g |
Fraction of glucuronide in the liver taken up directly into serum (the rest undergoes EHR) |
Physicochemical |
||
met1s |
Fraction of sulfate in the liver taken up directly into serum |
Physicochemical |
||
enterocytes |
Sum of enterocytes weights in duodenum, jejunum and ileum |
L |
Physicochemical |
|
kmliver |
Km of Glucuronidation in the liver |
nM |
Physicochemical |
|
vmaxliverC |
Vmax of Glucuronidation in the liver |
nmol/h/g liver |
Physicochemical |
|
fliverg |
Correction factor of glucuronidation in the liver |
Physicochemical |
||
kmlivers |
Km of Sulfation in the liver |
nM |
Physicochemical |
|
vmaxliversC |
Vmax of Sulfation in the liver |
nmol/h/g liver |
Physicochemical |
|
flivers |
Correction factor of sulfation in the liver |
Physicochemical |
||
EHRtime |
Time until EHR occurs |
h |
Physicochemical |
|
EHRrateC |
EHR of glucuronide |
1/h/kg bw^-0.25 |
Physicochemical |
|
k4C_IV |
Fecal elimination of glucuronide from the EHR compartment |
1/h/kg bw^-0.25 |
Physicochemical |
|
kurinebpaC |
Clearance, urine excretion of parent compound |
L/h/kg bw^0.75 |
Physicochemical |
|
kurinebpagC |
Clearance, urine excretion of glucuronide |
L/h/kg bw^0.75 |
Physicochemical |
|
kurinebpasC |
Clearance, urine excretion of sulfate |
L/h/kg bw^0.75 |
Physicochemical |
|
vreabsorptiongC |
Vmax for renal reabsorption of glucuronide |
nmol/h/kg bw^0.75 |
Physicochemical |
|
vreabsorptionsC |
Vmax for renal reabsorption of sulfate |
nmol/h/kg bw^0.75 |
Physicochemical |
|
kreabsorptiong |
Km for renal reabsorption of glucuronide |
nM |
Physicochemical |
|
kreabsorptions |
Km for renal reabsorption of sulfate |
nM |
Physicochemical |
|
kenterobpagC |
EHR of parent compound due to biliary excretion of glucuronide |
1/h/kg bw^-0.25 |
Physicochemical |
|
kenterobpasC |
EHR of parent compound due to biliary excretion of sulfate |
1/h/kg bw^-0.25 |
Physicochemical |
|
D_o |
oral dose |
ng/kg bw/dosing |
Other |
|
dose_O |
oral dose |
nmol/kg bw/dosing |
Other |
|
EoA_O |
Extent of oral absorption |
Physiological |
||
uptake_O |
amount of oral uptake |
nmol/dosing |
Other |
|
period_O |
uptake period |
h |
Other |
|
koa |
uptake rate |
nmol/h |
Other |
|
t0_O |
time point at which dosing starts |
h |
Other |
|
t1_O |
time point at which dosing ends |
h |
Other |
|
D_d |
dermal dose from thermal paper (TP) |
ng/kg bw/dosing |
Other |
|
EoA_D |
Extent of dermal absorption from TP |
Physiological |
||
dose_D |
dermal dose from TP |
nmol/kg bw/dosing |
Other |
|
aHL_D |
Half-life for dermal penetration |
h |
Other |
|
uptake_D |
amount of dermal uptake from TP |
nmol/dosing |
Other |
|
period_D |
Uptake period dermal exposure from TP |
h |
Other |
|
kda |
Uptake rate of dermal exposure from TP |
nmol/h |
Other |
|
t0_D |
Time points at which dermal dosing from TP starts |
h |
Other |
|
t1_D |
Time points at which dermal dosing from TP ends |
h |
Other |
|
D_d2 |
Dermal dose from PCPs |
ng/kg bw/dosing |
Other |
|
EoA_D2 |
Extent of dermal absorption from PCPs |
Physiological |
||
dose_D2 |
Dermal dose from PCPs |
nmol/kg bw/dosing |
Other |
|
aHL_D2 |
Half-life for dermal penetration from PCPs |
h |
Other |
|
uptake_D2 |
amount of dermal uptake from PCPs |
nmol/dosing |
Other |
|
period_D2 |
Uptake period dermal exposure from PCPs |
h |
Other |
|
kda2 |
uptake rate of dermal exposure from PCPs |
nmol/h |
Other |
|
t0_D2 |
Time points at which dermal dosing from PCPs starts |
h |
Other |
|
t1_D2 |
time points at which dermal dosing from TP ends |
h |
Other |
|
QC |
Cardiac output |
L/h |
Other |
|
Qfat |
Blood flow to the fat tissue |
L/h |
Other |
|
Qliver |
Blood flow to the liver tissue |
L/h |
Other |
|
Qgonad |
Blood flow to the gonads |
L/h |
Other |
|
Qbrain |
Blood flow to the brain |
L/h |
Other |
|
Qskin |
Blood flow to the skin tissue |
L/h |
Other |
|
Qslow |
Blood flow to the slowly perfused tissue |
L/h |
Other |
|
Qrich |
Blood flow to the richly perfused tissue |
L/h |
Other |
|
Vliver |
Volume of the liver |
L |
Other |
|
Vfat |
Volume of the fat tissue |
L |
Other |
|
Vgonad |
Volume of the gonads |
L |
Other |
|
Vplasma |
Volume of the plasma |
L |
Other |
|
Vbrain |
Volume of the brain |
L |
Other |
|
Vskin |
Volume of the skin |
L |
Other |
|
Vslow |
Volume of the slowly perfused tissue |
L |
Other |
|
Vrich |
richly perfused tissue |
L |
Other |
|
Vbodyg |
Volume of the distribution for BPAG |
L |
Other |
|
Vbodys |
Volume of the distribution for BPAS |
L |
Other |
|
BW075 |
BW^0.75 |
kg^0.75 |
Other |
|
BW025 |
BW^0.25 |
kg^0.25 |
Other |
|
vmaxliversCnew |
scaled Vmax of Sulfation of BPA in the liver |
nmol/h/kg bw^0.75 |
Other |
|
vmaxliverCnew |
scaled Vmax of Glucuronidation of BPA in the liver |
nmol/h/kg bw^0.75 |
Other |
|
vmaxgutgCnew |
scaled Vmax of Glucuronidation of BPA in the gut |
nmol/h/kg bw^0.75 |
Other |
|
vreabsorptiong |
scaled vmax of renal resorption of BPAG |
nmol/h |
Other |
|
vreabsorptions |
scaled vmax of renal resorption of BPAS |
nmol/h |
Other |
|
EHRrate |
scaled EHR of BPAG |
1/h |
Other |
|
k0 |
scaled Uptake of BPA from the stomach into the liver |
1/h |
Other |
|
ge |
scaled Gastric emptying of BPA |
1/h |
Other |
|
k1 |
scaled Uptake of BPA from small intestine into the liver |
1/h |
Other |
|
k4 |
scaled Fecal excretion of BPA after oral administration from small intestine |
1/h |
Other |
|
k4_IV |
scaled Fecal excretion of BPAG from the EHR compartment |
1/h |
Other |
|
vmaxliver |
rescaled and corrected vmax of BPA glucuronidation in the liver |
nmol/h |
Other |
|
kGIing |
scaled Uptake of BPAG from small intestine into serum |
1/h |
Other |
|
met2g |
Fraction of BPAG formed subject to EHR |
Other |
||
met2s |
Fraction of BPAS formed subject to EHR |
Other |
||
kurinebpa |
scaled Clearance of BPA via urine |
L/h |
Other |
|
kurinebpag |
scaled Clearance of BPAg via urine |
L/h |
Other |
|
kurinebpas |
scaled Clearance of BPAs via urine |
L/h |
Other |
|
vmaxlivers |
rescaled and corrected vmax of BPA sulfation in the liver |
nmol/h |
Other |
|
kGIins |
scaled Uptake of BPAS from small intestine into serum |
1/h |
Other |
|
vmaxgutg |
rescaled and corrected vmax of BPA glucuronidation in the gut |
nmol/h |
Other |
|
vmaxguts |
rescaled and corrected vmax of BPA sulfation in the gut |
nmol/h |
Other |
|
kenterobpag |
scaled EHR of BPA due to biliary excretion of BPAG |
1/h |
Other |
|
kenterobpas |
scaled EHR of BPA due to biliary excretion of BPAS |
1/h |
Other |
|
t0_D1_day1 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D2_day1 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D1_day2 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D2_day2 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D1_day3 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D2_day3 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D1_day4 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D2_day4 |
time points at which dermal dosing from Thermal paper starts |
h |
Other |
|
t0_D21_day1 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D22_day1 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D21_day2 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D22_day2 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D21_day3 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D22_day3 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D21_day4 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_D22_day4 |
time points at which dermal dosing from PCPs starts |
h |
Other |
|
t0_O1_day1 |
time points at which oral dosing starts |
h |
Other |
|
t0_O2_day1 |
time points at which oral dosing starts |
h |
Other |
|
t0_O3_day1 |
time points at which oral dosing starts |
h |
Other |
|
t0_O1_day2 |
time points at which oral dosing starts |
h |
Other |
|
t0_O2_day2 |
time points at which oral dosing starts |
h |
Other |
|
t0_O3_day2 |
time points at which oral dosing starts |
h |
Other |
|
t0_O1_day3 |
time points at which oral dosing starts |
h |
Other |
|
t0_O2_day3 |
time points at which oral dosing starts |
h |
Other |
|
t0_O3_day3 |
time points at which oral dosing starts |
h |
Other |
|
t0_O1_day4 |
time points at which oral dosing starts |
h |
Other |
|
t0_O2_day4 |
time points at which oral dosing starts |
h |
Other |
|
t0_O3_day4 |
time points at which oral dosing starts |
h |
Other |
|
ksiLiver |
Ksi of glucuronidation in liver |
nM |
Other |
|
ksiGut |
Ksi of glucuronidation in gut |
nM |
Other |
|
age |
age |
30 |
Age |
|
gender |
gender |
0 |
Sex |
|
QCC_adult_f |
QCC_adult_f |
Other |
||
QgonadC_adult_f |
QgonadC_adult_f |
Other |
||
QliverC_adult_f |
QliverC_adult_f |
Other |
||
QfatC_adult_f |
QfatC_adult_f |
Other |
||
QbrainC_adult_f |
QbrainC_adult_f |
Other |
||
QskinC_adult_f |
QskinC_adult_f |
Other |
||
QmuscleC_adult_f |
QmuscleC_adult_f |
Other |
||
VplasmaC_adult_f |
VplasmaC_adult_f |
Other |
||
VfatC_adult_f |
VfatC_adult_f |
Other |
||
VliverC_adult_f |
VliverC_adult_f |
Other |
||
VbrainC_adult_f |
VbrainC_adult_f |
Other |
||
VskinC_adult_f |
VskinC_adult_f |
Other |
||
VgonadC_adult_f |
VgonadC_adult_f |
Other |
||
VmuscleC_adult_f |
VmuscleC_adult_f |
Other |
||
VrichC_adult_f |
VrichC_adult_f |
Other |
||
VbodygC_adult_f |
VbodygC_adult_f |
Other |
||
VbodysC_adult_f |
VbodysC_adult_f |
Other |
||
QCC_adult_m |
QCC_adult_m |
Other |
||
QgonadC_adult_m |
QgonadC_adult_m |
Other |
||
QliverC_adult_m |
QliverC_adult_m |
Other |
||
QfatC_adult_m |
QfatC_adult_m |
Other |
||
QbrainC_adult_m |
QbrainC_adult_m |
Other |
||
QskinC_adult_m |
QskinC_adult_m |
Other |
||
QmuscleC_adult_m |
QmuscleC_adult_m |
Other |
||
VplasmaC_adult_m |
VplasmaC_adult_m |
Other |
||
VfatC_adult_m |
VfatC_adult_m |
Other |
||
VliverC_adult_m |
VliverC_adult_m |
Other |
||
VbrainC_adult_m |
VbrainC_adult_m |
Other |
||
VskinC_adult_m |
VskinC_adult_m |
Other |
||
VgonadC_adult_m |
VgonadC_adult_m |
Other |
||
VmuscleC_adult_m |
VmuscleC_adult_m |
Other |
||
VrichC_adult_m |
VrichC_adult_m |
Other |
||
VbodygC_adult_m |
VbodygC_adult_m |
Other |
||
VbodysC_adult_m |
VbodysC_adult_m |
Other |
||
QCC_adolescent_f |
QCC_adolescent_f |
Other |
||
QgonadC_adolescent_f |
QgonadC_adolescent_f |
Other |
||
QliverC_adolescent_f |
QliverC_adolescent_f |
Other |
||
QfatC_adolescent_f |
QfatC_adolescent_f |
Other |
||
QbrainC_adolescent_f |
QbrainC_adolescent_f |
Other |
||
QskinC_adolescent_f |
QskinC_adolescent_f |
Other |
||
QmuscleC_adolescent_f |
QmuscleC_adolescent_f |
Other |
||
VplasmaC_adolescent_f |
VplasmaC_adolescent_f |
Other |
||
VfatC_adolescent_f |
VfatC_adolescent_f |
Other |
||
VliverC_adolescent_f |
VliverC_adolescent_f |
Other |
||
VbrainC_adolescent_f |
VbrainC_adolescent_f |
Other |
||
VskinC_adolescent_f |
VskinC_adolescent_f |
Other |
||
VgonadC_adolescent_f |
VgonadC_adolescent_f |
Other |
||
VmuscleC_adolescent_f |
VmuscleC_adolescent_f |
Other |
||
VrichC_adolescent_f |
VrichC_adolescent_f |
Other |
||
VbodygC_adolescent_f |
VbodygC_adolescent_f |
Other |
||
VbodysC_adolescent_f |
VbodysC_adolescent_f |
Other |
||
QCC_adolescent_m |
QCC_adolescent_m |
Other |
||
QgonadC_adolescent_m |
QgonadC_adolescent_m |
Other |
||
QliverC_adolescent_m |
QliverC_adolescent_m |
Other |
||
QfatC_adolescent_m |
QfatC_adolescent_m |
Other |
||
QbrainC_adolescent_m |
QbrainC_adolescent_m |
Other |
||
QskinC_adolescent_m |
QskinC_adolescent_m |
Other |
||
QmuscleC_adolescent_m |
QmuscleC_adolescent_m |
Other |
||
VplasmaC_adolescent_m |
VplasmaC_adolescent_m |
Other |
||
VfatC_adolescent_m |
VfatC_adolescent_m |
Other |
||
VliverC_adolescent_m |
VliverC_adolescent_m |
Other |
||
VbrainC_adolescent_m |
VbrainC_adolescent_m |
Other |
||
VskinC_adolescent_m |
VskinC_adolescent_m |
Other |
||
VgonadC_adolescent_m |
VgonadC_adolescent_m |
Other |
||
VmuscleC_adolescent_m |
VmuscleC_adolescent_m |
Other |
||
VrichC_adolescent_m |
VrichC_adolescent_m |
Other |
||
VbodygC_adolescent_m |
VbodygC_adolescent_m |
Other |
||
VbodysC_adolescent_m |
VbodysC_adolescent_m |
Other |
||
QCC_child_f |
QCC_child_f |
Other |
||
QgonadC_child_f |
QgonadC_child_f |
Other |
||
QliverC_child_f |
QliverC_child_f |
Other |
||
QfatC_child_f |
QfatC_child_f |
Other |
||
QbrainC_child_f |
QbrainC_child_f |
Other |
||
QskinC_child_f |
QskinC_child_f |
Other |
||
QmuscleC_child_f |
QmuscleC_child_f |
Other |
||
VplasmaC_child_f |
VplasmaC_child_f |
Other |
||
VfatC_child_f |
VfatC_child_f |
Other |
||
VliverC_child_f |
VliverC_child_f |
Other |
||
VbrainC_child_f |
VbrainC_child_f |
Other |
||
VskinC_child_f |
VskinC_child_f |
Other |
||
VgonadC_child_f |
VgonadC_child_f |
Other |
||
VmuscleC_child_f |
VmuscleC_child_f |
Other |
||
VrichC_child_f |
VrichC_child_f |
Other |
||
VbodygC_child_f |
VbodygC_child_f |
Other |
||
VbodysC_child_f |
VbodysC_child_f |
Other |
||
QCC_child_m |
QCC_child_m |
Other |
||
QgonadC_child_m |
QgonadC_child_m |
Other |
||
QliverC_child_m |
QliverC_child_m |
Other |
||
QfatC_child_m |
QfatC_child_m |
Other |
||
QbrainC_child_m |
QbrainC_child_m |
Other |
||
QskinC_child_m |
QskinC_child_m |
Other |
||
QmuscleC_child_m |
QmuscleC_child_m |
Other |
||
VplasmaC_child_m |
VplasmaC_child_m |
Other |
||
VfatC_child_m |
VfatC_child_m |
Other |
||
VliverC_child_m |
VliverC_child_m |
Other |
||
VbrainC_child_m |
VbrainC_child_m |
Other |
||
VskinC_child_m |
VskinC_child_m |
Other |
||
VgonadC_child_m |
VgonadC_child_m |
Other |
||
VmuscleC_child_m |
VmuscleC_child_m |
Other |
||
VrichC_child_m |
VrichC_child_m |
Other |
||
VbodygC_child_m |
VbodygC_child_m |
Other |
||
VbodysC_child_m |
VbodysC_child_m |
Other |
EuroMix Bisphenols PBPK model (v2)
EuroMix Bisphenols PBPK model by Karrer et al. (2019).
Model aliases: EuroMix_Bisphenols_PBPK_model_V2, PBPKModel_BPA_Reimplementation.
| Id | Description | Unit |
|---|---|---|
Oral |
Oral exposure |
nmoles |
Dermal |
Dermal exposure |
nmoles |
Inhalation |
Inhalation exposure |
nmoles |
| Id | Description | ScalingFactor | MultiplicationFactor | Unit |
|---|---|---|---|---|
CPlasmaOut |
Concentration in plasma |
nmol/L |
||
CGonadOut |
Concentration in gonads |
nmol/L |
||
AurinebpaOut |
Cumulative excretion of BPA in urine |
nmoles |
||
AurinegOut |
Cumulative excretion of BPA-g in urine |
nmoles |
||
AurineTotalOut |
Cumulative excretion of BPA and metabolites in urine |
nmoles |
| Id | Description | Default | Unit | Type |
|---|---|---|---|---|
BW |
Bodyweight |
kg |
BodyWeight |
|
QCC |
Cardiac output |
L/min |
Physiological |
|
QgonadC |
Fractional blood flow to gonads |
Physiological |
||
QliverC |
Fractional blood flow to liver |
Physiological |
||
QfatC |
Fractional blood flow to fat tissue |
Physiological |
||
QbrainC |
Fractional blood flow to brain |
Physiological |
||
QskinC |
Fractional blood flow to skin |
Physiological |
||
QmuscleC |
Fractional blood flow to gonads |
Physiological |
||
VplasmaC |
Fractional volume of plasma |
Physiological |
||
VfatC |
Fractional volume of fat tissue |
Physiological |
||
VliverC |
Fractional volume of liver tissue |
Physiological |
||
VbrainC |
Fractional volume of brain tissue |
Physiological |
||
VskinC |
Fractional volume of skin tissue |
Physiological |
||
VgonadC |
Fractional volume of gonads |
Physiological |
||
VmuscleC |
Fractional volume of muscle tissue |
Physiological |
||
VrichC |
Fractional volume of richly perfused tissue |
Physiological |
||
VbodygC |
Distribution volume of BPA-g |
Physiological |
||
VbodysC |
Distribution volume of BPA-s |
Other |
||
pliver |
Partition coefficient liver to blood |
PartitionCoefficient |
||
pfat |
Partition coefficient fat to blood |
PartitionCoefficient |
||
pslow |
Partition coefficient slowly perfused tissue to blood |
PartitionCoefficient |
||
prich |
Partition coefficient richly perfused tissue to blood |
PartitionCoefficient |
||
pgonad |
Partition coefficient gonads to blood |
PartitionCoefficient |
||
pbrain |
Partition coefficient brain to blood |
PartitionCoefficient |
||
pskin |
Partition coefficient skin to blood |
PartitionCoefficient |
||
geC |
Gastric emptying |
1/h/kg bw^-0.25 |
Physicochemical |
|
k0C |
Oral uptake from the stomach into the liver |
1/h/kg bw^-0.25 |
Physicochemical |
|
k1C |
Oral uptake from the small intestine into the liver |
1/h/kg bw^-0.25 |
Physicochemical |
|
k4C |
Fecal elimination from small intestine after oral administration |
1/h/kg bw^-0.25 |
Physicochemical |
|
kGIingC |
Transport of glucuronide from enterocytes into serum |
1/h/kg bw^-0.25 |
Physicochemical |
|
kGIinsC |
Transport of sulfate from enterocytes into serum |
1/h/kg bw^-0.25 |
Physicochemical |
|
kmgutg |
Km of Glucuronidation in the gut |
nM |
Physicochemical |
|
vmaxgutgC |
Vmax of Glucuronidation in the gut |
nmol/h/kg bw |
Physicochemical |
|
fgutg |
Correction factor of glucuronidation in the gut |
Physicochemical |
||
kmguts |
Km of Sulfation in the gut |
nM |
Physicochemical |
|
vmaxgutsC |
Vmax of Sulfation in the gut |
nmol/h/kg bw |
Physicochemical |
|
fguts |
Correction factor of sulfation in the gut |
Physicochemical |
||
met1g |
Fraction of glucuronide in the liver taken up directly into serum (the rest undergoes EHR) |
Physicochemical |
||
met1s |
Fraction of sulfate in the liver taken up directly into serum |
Physicochemical |
||
enterocytes |
Sum of enterocytes weights in duodenum, jejunum and ileum |
L |
Physicochemical |
|
kmliver |
Km of Glucuronidation in the liver |
nM |
Physicochemical |
|
vmaxliverC |
Vmax of Glucuronidation in the liver |
nmol/h/g liver |
Physicochemical |
|
fliverg |
Correction factor of glucuronidation in the liver |
Physicochemical |
||
kmlivers |
Km of Sulfation in the liver |
nM |
Physicochemical |
|
vmaxliversC |
Vmax of Sulfation in the liver |
nmol/h/g liver |
Physicochemical |
|
flivers |
Correction factor of sulfation in the liver |
Physicochemical |
||
EHRtime |
Time until EHR occurs |
h |
Physicochemical |
|
EHRrateC |
EHR of glucuronide |
1/h/kg bw^-0.25 |
Physicochemical |
|
k4C_IV |
Fecal elimination of glucuronide from the EHR compartment |
1/h/kg bw^-0.25 |
Physicochemical |
|
kurinebpaC |
Clearance, urine excretion of parent compound |
L/h/kg bw^0.75 |
Physicochemical |
|
kurinebpagC |
Clearance, urine excretion of glucuronide |
L/h/kg bw^0.75 |
Physicochemical |
|
kurinebpasC |
Clearance, urine excretion of sulfate |
L/h/kg bw^0.75 |
Physicochemical |
|
vreabsorptiongC |
Vmax for renal reabsorption of glucuronide |
nmol/h/kg bw^0.75 |
Physicochemical |
|
vreabsorptionsC |
Vmax for renal reabsorption of sulfate |
nmol/h/kg bw^0.75 |
Physicochemical |
|
kreabsorptiong |
Km for renal reabsorption of glucuronide |
nM |
Physicochemical |
|
kreabsorptions |
Km for renal reabsorption of sulfate |
nM |
Physicochemical |
|
kenterobpagC |
EHR of parent compound due to biliary excretion of glucuronide |
1/h/kg bw^-0.25 |
Physicochemical |
|
kenterobpasC |
EHR of parent compound due to biliary excretion of sulfate |
1/h/kg bw^-0.25 |
Physicochemical |
|
koa |
uptake rate |
nmol/h |
Other |
|
EoA_D |
Extent of dermal absorption from TP |
Physiological |
||
aHL_D |
Half-life for dermal penetration |
h |
Other |
|
kda |
Uptake rate of dermal exposure from TP |
nmol/h |
Other |
|
EoA_D2 |
Extent of dermal absorption from PCPs |
Physiological |
||
aHL_D2 |
Half-life for dermal penetration from PCPs |
h |
Other |
|
kda2 |
Uptake rate of dermal exposure from PCPs |
nmol/h |
Other |
|
QC |
Cardiac output |
L/h |
Other |
|
Qfat |
Blood flow to the fat tissue |
L/h |
Other |
|
Qliver |
Blood flow to the liver tissue |
L/h |
Other |
|
Qgonad |
Blood flow to the gonads |
L/h |
Other |
|
Qbrain |
Blood flow to the brain |
L/h |
Other |
|
Qskin |
Blood flow to the skin tissue |
L/h |
Other |
|
Qslow |
Blood flow to the slowly perfused tissue |
L/h |
Other |
|
Qrich |
Blood flow to the richly perfused tissue |
L/h |
Other |
|
Vliver |
Volume of the liver |
L |
Other |
|
Vfat |
Volume of the fat tissue |
L |
Other |
|
Vgonad |
Volume of the gonads |
L |
Other |
|
Vplasma |
Volume of the plasma |
L |
Other |
|
Vbrain |
Volume of the brain |
L |
Other |
|
Vskin |
Volume of the skin |
L |
Other |
|
Vslow |
Volume of the slowly perfused tissue |
L |
Other |
|
Vrich |
richly perfused tissue |
L |
Other |
|
Vbodyg |
Volume of the distribution for BPAG |
L |
Other |
|
Vbodys |
Volume of the distribution for BPAS |
L |
Other |
|
vreabsorptiong |
scaled vmax of renal resorption of BPAG |
nmol/h |
Other |
|
vreabsorptions |
scaled vmax of renal resorption of BPAS |
nmol/h |
Other |
|
EHRrate |
scaled EHR of BPAG |
1/h |
Other |
|
k0 |
scaled Uptake of BPA from the stomach into the liver |
1/h |
Other |
|
ge |
scaled Gastric emptying of BPA |
1/h |
Other |
|
k1 |
scaled Uptake of BPA from small intestine into the liver |
1/h |
Other |
|
k4 |
scaled Fecal excretion of BPA after oral administration from small intestine |
1/h |
Other |
|
k4_IV |
scaled Fecal excretion of BPAG from the EHR compartment |
1/h |
Other |
|
vmaxliver |
rescaled and corrected vmax of BPA glucuronidation in the liver |
nmol/h |
Other |
|
kGIing |
scaled Uptake of BPAG from small intestine into serum |
1/h |
Other |
|
met2g |
Fraction of BPAG formed subject to EHR |
Other |
||
met2s |
Fraction of BPAS formed subject to EHR |
Other |
||
kurinebpa |
scaled Clearance of BPA via urine |
L/h |
Other |
|
kurinebpag |
scaled Clearance of BPAg via urine |
L/h |
Other |
|
kurinebpas |
scaled Clearance of BPAs via urine |
L/h |
Other |
|
vmaxlivers |
rescaled and corrected vmax of BPA sulfation in the liver |
nmol/h |
Other |
|
kGIins |
scaled Uptake of BPAS from small intestine into serum |
1/h |
Other |
|
vmaxgutg |
rescaled and corrected vmax of BPA glucuronidation in the gut |
nmol/h |
Other |
|
vmaxguts |
rescaled and corrected vmax of BPA sulfation in the gut |
nmol/h |
Other |
|
kenterobpag |
scaled EHR of BPA due to biliary excretion of BPAG |
1/h |
Other |
|
kenterobpas |
scaled EHR of BPA due to biliary excretion of BPAS |
1/h |
Other |
|
ksiLiver |
Ksi of glucuronidation in liver |
nM |
Other |
|
ksiGut |
Ksi of glucuronidation in gut |
nM |
Other |
|
age |
age |
30 |
Age |
|
gender |
gender |
0 |
Sex |
|
QCC_adult_f |
QCC_adult_f |
Other |
||
QgonadC_adult_f |
QgonadC_adult_f |
Other |
||
QliverC_adult_f |
QliverC_adult_f |
Other |
||
QfatC_adult_f |
QfatC_adult_f |
Other |
||
QbrainC_adult_f |
QbrainC_adult_f |
Other |
||
QskinC_adult_f |
QskinC_adult_f |
Other |
||
QmuscleC_adult_f |
QmuscleC_adult_f |
Other |
||
VplasmaC_adult_f |
VplasmaC_adult_f |
Other |
||
VfatC_adult_f |
VfatC_adult_f |
Other |
||
VliverC_adult_f |
VliverC_adult_f |
Other |
||
VbrainC_adult_f |
VbrainC_adult_f |
Other |
||
VskinC_adult_f |
VskinC_adult_f |
Other |
||
VgonadC_adult_f |
VgonadC_adult_f |
Other |
||
VmuscleC_adult_f |
VmuscleC_adult_f |
Other |
||
VrichC_adult_f |
VrichC_adult_f |
Other |
||
VbodygC_adult_f |
VbodygC_adult_f |
Other |
||
VbodysC_adult_f |
VbodysC_adult_f |
Other |
||
QCC_adult_m |
QCC_adult_m |
Other |
||
QgonadC_adult_m |
QgonadC_adult_m |
Other |
||
QliverC_adult_m |
QliverC_adult_m |
Other |
||
QfatC_adult_m |
QfatC_adult_m |
Other |
||
QbrainC_adult_m |
QbrainC_adult_m |
Other |
||
QskinC_adult_m |
QskinC_adult_m |
Other |
||
QmuscleC_adult_m |
QmuscleC_adult_m |
Other |
||
VplasmaC_adult_m |
VplasmaC_adult_m |
Other |
||
VfatC_adult_m |
VfatC_adult_m |
Other |
||
VliverC_adult_m |
VliverC_adult_m |
Other |
||
VbrainC_adult_m |
VbrainC_adult_m |
Other |
||
VskinC_adult_m |
VskinC_adult_m |
Other |
||
VgonadC_adult_m |
VgonadC_adult_m |
Other |
||
VmuscleC_adult_m |
VmuscleC_adult_m |
Other |
||
VrichC_adult_m |
VrichC_adult_m |
Other |
||
VbodygC_adult_m |
VbodygC_adult_m |
Other |
||
VbodysC_adult_m |
VbodysC_adult_m |
Other |
||
QCC_adolescent_f |
QCC_adolescent_f |
Other |
||
QgonadC_adolescent_f |
QgonadC_adolescent_f |
Other |
||
QliverC_adolescent_f |
QliverC_adolescent_f |
Other |
||
QfatC_adolescent_f |
QfatC_adolescent_f |
Other |
||
QbrainC_adolescent_f |
QbrainC_adolescent_f |
Other |
||
QskinC_adolescent_f |
QskinC_adolescent_f |
Other |
||
QmuscleC_adolescent_f |
QmuscleC_adolescent_f |
Other |
||
VplasmaC_adolescent_f |
VplasmaC_adolescent_f |
Other |
||
VfatC_adolescent_f |
VfatC_adolescent_f |
Other |
||
VliverC_adolescent_f |
VliverC_adolescent_f |
Other |
||
VbrainC_adolescent_f |
VbrainC_adolescent_f |
Other |
||
VskinC_adolescent_f |
VskinC_adolescent_f |
Other |
||
VgonadC_adolescent_f |
VgonadC_adolescent_f |
Other |
||
VmuscleC_adolescent_f |
VmuscleC_adolescent_f |
Other |
||
VrichC_adolescent_f |
VrichC_adolescent_f |
Other |
||
VbodygC_adolescent_f |
VbodygC_adolescent_f |
Other |
||
VbodysC_adolescent_f |
VbodysC_adolescent_f |
Other |
||
QCC_adolescent_m |
QCC_adolescent_m |
Other |
||
QgonadC_adolescent_m |
QgonadC_adolescent_m |
Other |
||
QliverC_adolescent_m |
QliverC_adolescent_m |
Other |
||
QfatC_adolescent_m |
QfatC_adolescent_m |
Other |
||
QbrainC_adolescent_m |
QbrainC_adolescent_m |
Other |
||
QskinC_adolescent_m |
QskinC_adolescent_m |
Other |
||
QmuscleC_adolescent_m |
QmuscleC_adolescent_m |
Other |
||
VplasmaC_adolescent_m |
VplasmaC_adolescent_m |
Other |
||
VfatC_adolescent_m |
VfatC_adolescent_m |
Other |
||
VliverC_adolescent_m |
VliverC_adolescent_m |
Other |
||
VbrainC_adolescent_m |
VbrainC_adolescent_m |
Other |
||
VskinC_adolescent_m |
VskinC_adolescent_m |
Other |
||
VgonadC_adolescent_m |
VgonadC_adolescent_m |
Other |
||
VmuscleC_adolescent_m |
VmuscleC_adolescent_m |
Other |
||
VrichC_adolescent_m |
VrichC_adolescent_m |
Other |
||
VbodygC_adolescent_m |
VbodygC_adolescent_m |
Other |
||
VbodysC_adolescent_m |
VbodysC_adolescent_m |
Other |
||
QCC_child_f |
QCC_child_f |
Other |
||
QgonadC_child_f |
QgonadC_child_f |
Other |
||
QliverC_child_f |
QliverC_child_f |
Other |
||
QfatC_child_f |
QfatC_child_f |
Other |
||
QbrainC_child_f |
QbrainC_child_f |
Other |
||
QskinC_child_f |
QskinC_child_f |
Other |
||
QmuscleC_child_f |
QmuscleC_child_f |
Other |
||
VplasmaC_child_f |
VplasmaC_child_f |
Other |
||
VfatC_child_f |
VfatC_child_f |
Other |
||
VliverC_child_f |
VliverC_child_f |
Other |
||
VbrainC_child_f |
VbrainC_child_f |
Other |
||
VskinC_child_f |
VskinC_child_f |
Other |
||
VgonadC_child_f |
VgonadC_child_f |
Other |
||
VmuscleC_child_f |
VmuscleC_child_f |
Other |
||
VrichC_child_f |
VrichC_child_f |
Other |
||
VbodygC_child_f |
VbodygC_child_f |
Other |
||
VbodysC_child_f |
VbodysC_child_f |
Other |
||
QCC_child_m |
QCC_child_m |
Other |
||
QgonadC_child_m |
QgonadC_child_m |
Other |
||
QliverC_child_m |
QliverC_child_m |
Other |
||
QfatC_child_m |
QfatC_child_m |
Other |
||
QbrainC_child_m |
QbrainC_child_m |
Other |
||
QskinC_child_m |
QskinC_child_m |
Other |
||
QmuscleC_child_m |
QmuscleC_child_m |
Other |
||
VplasmaC_child_m |
VplasmaC_child_m |
Other |
||
VfatC_child_m |
VfatC_child_m |
Other |
||
VliverC_child_m |
VliverC_child_m |
Other |
||
VbrainC_child_m |
VbrainC_child_m |
Other |
||
VskinC_child_m |
VskinC_child_m |
Other |
||
VgonadC_child_m |
VgonadC_child_m |
Other |
||
VmuscleC_child_m |
VmuscleC_child_m |
Other |
||
VrichC_child_m |
VrichC_child_m |
Other |
||
VbodygC_child_m |
VbodygC_child_m |
Other |
||
VbodysC_child_m |
VbodysC_child_m |
Other |
EuroMix Generic PBTK model (v5)
Cosmos version 5 (adapted 9/11/2018)
Model aliases: EuroMix_Generic_PBTK_model_V5, CosmosV4, CosmosV5.
| Id | Description | Unit |
|---|---|---|
Oral |
Oral exposure |
mmoles |
Dermal |
Dermal exposure |
mmoles |
Inhalation |
Inhalatory exposure |
mmoles |
| Id | Description | ScalingFactor | MultiplicationFactor | Unit |
|---|---|---|---|---|
CVen |
Venous blood |
scVBlood |
0.66667 |
mM |
CArt |
Arterial blood |
scVBlood |
0.33333 |
mM |
CFat |
Fat tissues |
scVFat |
mM |
|
CPoor |
Muscle tissues |
mM |
||
CRich |
Viscera |
scVRich |
mM |
|
CLiver |
Liver |
scVLiver |
mM |
|
CSkin_u |
Viable skin, unexposed |
mM |
||
CSkin_e |
Viable skin, exposed |
BSA, Height_vs, fsA_exposed |
mM |
|
CSkin_sc_u |
Skin stratum corneum, unexposed |
mM |
||
CSkin_sc_e |
Skin stratum corneum, exposed |
BSA, Height_vs, fsA_exposed |
mM |
| Id | Description | Default | Unit | Type |
|---|---|---|---|---|
BM |
Body mass |
kg |
BodyWeight |
|
BSA |
Body skin surface area |
dm2 |
BodySurfaceArea |
|
scVFat |
Fat as fraction of total body volume |
Physiological |
||
scVRich |
Richly perfused tissues (viscera) as fraction of total body volume |
Physiological |
||
scVLiver |
Liver as fraction of total body volume |
Physiological |
||
scVBlood |
Blood as fraction of total body volume |
Physiological |
||
Height_sc |
Skin thickness |
decimeter |
Physiological |
|
Height_vs |
Viable skin |
Physiological |
||
scFBlood |
Total blood flow per unit mass |
L/h/kg |
Physiological |
|
scFFat |
Fat fraction of total blood flow going to compartments |
Physiological |
||
scFPoor |
Poorly perfused tissues (muscles) fraction of total blood flow going to compartments |
Physiological |
||
scFLiver |
Liver fraction of total blood flow going to compartments |
Physiological |
||
scFSkin |
Skin fraction of total blood flow going to compartments |
Physiological |
||
Falv |
Alveolar ventilation rate |
L/h |
Physiological |
|
mic |
Microsomal proteins content |
mg/gr liver |
Physiological |
|
PCAir |
Partition coefficient: blood over air |
PartitionCoefficient |
||
log_PCFat |
Scaled parameter, partition coefficient: fat over blood |
PartitionCoefficient |
||
log_aPoor |
Scaled parameter, partition coefficient: muscle over blood (poorly perfused tissue) |
PartitionCoefficient |
||
log_aRich |
Scaled parameter, partition coefficient: viscera over blood (richly perfused tissue) |
PartitionCoefficient |
||
log_aLiver |
Scaled parameter, partition coefficient: liver over blood |
PartitionCoefficient |
||
log_aSkin |
Scaled parameter, partition coefficient: viable skin / blood |
PartitionCoefficient |
||
log_aSkin_sc |
Scaled parameter, partition coefficient: viable skin / stratum corneum |
PartitionCoefficient |
||
Kp_sc_vs |
Diffusion rate from stratum corneum to viable skin |
decimeter/h |
Physicochemical |
|
Ke |
Renal excretion rate |
L/h |
Physicochemical |
|
Michaelis |
Flag for Michaelis-Menten vs linear metabolism (0 = linear) |
Physicochemical |
||
Vmax |
Maximum rate of metabolism |
mmoles/h/L liver |
Physicochemical |
|
Km |
Michaelis-Menten constant |
mM |
Physicochemical |
|
CLH |
Hepatic clearance |
Physicochemical |
||
fup |
Unbound fraction in blood |
Physicochemical |
||
Frac |
Fraction absorbed by the gut |
Physicochemical |
||
kGut |
Oral 1st order absorption rate constant |
1/h |
Physicochemical |
|
Cinh |
Inhalation |
Other |
||
Tinh |
Inhalation duration |
Other |
||
OralDose |
mmol |
Other |
||
DermalDose |
mmol |
Other |
||
fSA_exposed |
Fraction of skin surface area actually exposed |
Physicochemical |
||
FBlood |
Blood flow |
Other |
||
FFat |
Scaled parameters |
Other |
||
FPoor |
Scaled parameters |
Other |
||
FRich |
Scaled parameters |
Other |
||
FLiver |
Scaled parameters |
Other |
||
FSkin |
Scaled parameters |
Other |
||
VFat |
Scaled parameters |
Other |
||
VRich |
Scaled parameters |
Other |
||
VLiver |
Scaled parameters |
Other |
||
VSkin_e |
Scaled parameters |
Other |
||
VSkin_u |
Scaled parameters |
Other |
||
VSkin_sc_e |
Scaled parameters |
Other |
||
VSkin_sc_u |
Scaled parameters |
Other |
||
VBlood |
Scaled parameters |
Other |
||
VPoor |
Scaled parameters |
Other |
||
VArt |
Scaled parameters |
Other |
||
VVen |
Scaled parameters |
Other |
||
FSkin_e |
Scaled parameters |
Other |
||
FSkin_u |
Scaled parameters |
Other |
||
PCFat |
Partition coefficient: fat over blood |
PartitionCoefficient |
||
PCPoor |
Partition coefficient: muscle over blood (poorly perfused tissue) |
PartitionCoefficient |
||
PCRich |
Partition coefficient: viscera over blood (richly perfused tissue) |
PartitionCoefficient |
||
PCLiver |
Partition coefficient: liver over blood |
PartitionCoefficient |
||
PCSkin |
Partition coefficient: viable skin / blood |
PartitionCoefficient |
||
PCSkin_sc |
Partition coefficient: viable skin / stratum corneum |
PartitionCoefficient |
||
ResampledPCFat |
Resampled value PCFat |
PartitionCoefficient |
EuroMix Generic PBTK model (v6)
Cosmos version 6 (received 3/27/2019)
Model aliases: EuroMix_Generic_PBTK_model_V6, CosmosV6.
| Id | Description | Unit |
|---|---|---|
Oral |
Oral exposure |
mmoles |
Dermal |
Dermal exposure |
mmoles |
Inhalation |
Inhalatory exposure |
mmoles |
| Id | Description | ScalingFactor | MultiplicationFactor | Unit |
|---|---|---|---|---|
CTotal |
Total concentration |
mM |
||
CVen |
Venous blood concentration |
scVBlood |
0.66667 |
mM |
CArt |
Arterial blood concentration |
scVBlood |
0.33333 |
mM |
CFat |
Fat (adipose) tissue concentration |
scVFat |
mM |
|
CPoor |
Poorly perfused tissue (muscle) concentration |
mM |
||
CRich |
Richly perfused tissue (viscera) concentration |
scVRich |
mM |
|
CLiver |
Liver concentration |
scVLiver |
mM |
|
CSkin_u |
Viable unexposed skin concentration |
mM |
||
CSkin_e |
Viable exposed skin concentration |
BSA, Height_vs, fsA_exposed |
mM |
|
CSkin_sc_u |
Skin unexposed stratum corneum concentration |
mM |
||
CSkin_sc_e |
Skin exposed stratum corneum concentration |
BSA, Height_vs, fsA_exposed |
mM |
| Id | Description | Default | Unit | Type |
|---|---|---|---|---|
BM |
Body mass |
kg |
BodyWeight |
|
BSA |
Body surface area (internally scaled by an allometric scaling factor s = 70/BM^0.3) |
dm2 |
BodySurfaceArea |
|
scVFat |
Fat as fraction of total body volume |
Physiological |
||
scVRich |
Richly perfused tissues (viscera) as fraction of total body volume |
Physiological |
||
scVLiver |
Liver as fraction of total body volume |
Physiological |
||
scVBlood |
Blood as fraction of total body volume |
Physiological |
||
Height_sc |
Skin thickness |
decimeter |
Physiological |
|
Height_vs |
Viable skin |
Physiological |
||
scFBlood |
Total blood flow per unit mass |
L/h/kg |
Physiological |
|
scFFat |
Fat fraction of total blood flow going to compartments |
Physiological |
||
scFPoor |
Poorly perfused tissues (muscles) fraction of total blood flow going to compartments |
Physiological |
||
scFLiver |
Liver fraction of total blood flow going to compartments |
Physiological |
||
scFSkin |
Skin fraction of total blood flow going to compartments |
Physiological |
||
Falv |
Alveolar ventilation rate |
L/h |
Physiological |
|
mic |
Microsomal proteins content |
mg/gr liver |
Physiological |
|
PCAir |
Partition coefficient: blood over air |
PartitionCoefficient |
||
log_PCFat |
Scaled parameter, partition coefficient: fat over blood |
PartitionCoefficient |
||
log_aPoor |
Scaled parameter, partition coefficient: muscle over blood (poorly perfused tissue) |
PartitionCoefficient |
||
log_aRich |
Scaled parameter, partition coefficient: viscera over blood (richly perfused tissue) |
PartitionCoefficient |
||
log_aLiver |
Scaled parameter, partition coefficient: liver over blood |
PartitionCoefficient |
||
log_aSkin |
Scaled parameter, partition coefficient: viable skin over blood |
PartitionCoefficient |
||
log_aSkin_sc |
Scaled parameter, partition coefficient: viable skin stratum corneum over blood |
PartitionCoefficient |
||
Kp_sc_vs |
Diffusion rate from stratum corneum to viable skin |
decimeter/h |
Physicochemical |
|
Ke |
Renal excretion rate |
L/h |
Physicochemical |
|
Michaelis |
Flag for Michaelis-Menten vs linear metabolism (0 = linear) |
Physicochemical |
||
Vmax |
Maximum rate of metabolism |
mmoles/h/L liver |
Physicochemical |
|
Km |
Michaelis-Menten constant for metabolism |
mM |
Physicochemical |
|
CLH |
Hepatic Physicochemical clearance |
Physicochemical |
||
fub |
Unbound fraction in blood |
Physicochemical |
||
Frac |
Fraction absorbed by the gut |
Physicochemical |
||
kGut |
Oral 1st order absorption rate constant |
1/h |
Physicochemical |
|
Cinh |
Inhalation |
Other |
||
Tinh |
Inhalation duration |
Other |
||
OralDose |
mmol |
Other |
||
DermalDose |
mmol |
Other |
||
fSA_exposed |
Fraction of skin surface area actually exposed |
Physicochemical |
||
FBlood |
Blood flow |
Other |
||
FFat |
Scaled parameters, blood flow to the fat |
Other |
||
FPoor |
Scaled parameters, blood flow to poorly perfused tissues |
Other |
||
FRich |
Scaled parameters, blood flow to richly perfused tissues |
Other |
||
FLiver |
Scaled parameters, blood flow to the liver |
Other |
||
FSkin |
Scaled parameters, blood flow to the skin |
Other |
||
VFat |
Scaled parameters |
Other |
||
VRich |
Scaled parameters, richly perfused tissue volume |
Other |
||
VLiver |
Scaled parameters, liver volume |
Other |
||
VSkin_e |
Scaled parameters, exposed skin volume |
Other |
||
VSkin_u |
Scaled parameters, unexposed skin volume |
Other |
||
VSkin_sc_e |
Scaled parameters, stratum corneum exposed skin volume |
Other |
||
VSkin_sc_u |
Scaled parameters, stratum corneum unexposed skin volume |
Other |
||
VBlood |
Scaled parameters, blood volume |
Other |
||
VPoor |
Scaled parameters, poorly perfused tissue volume |
Other |
||
VArt |
Scaled parameters, arterial blood volume |
Other |
||
VVen |
Scaled parameters, venous blood volume |
Other |
||
FSkin_e |
Scaled parameters, blood flow to exposed skin |
Other |
||
FSkin_u |
Scaled parameters, blood flow to unexposed skin |
Other |
||
PCFat |
Partition coefficient: fat over blood |
PartitionCoefficient |
||
PCPoor |
Partition coefficient: muscle over blood (poorly perfused tissue) |
PartitionCoefficient |
||
PCRich |
Partition coefficient: viscera over blood (richly perfused tissue) |
PartitionCoefficient |
||
PCLiver |
Partition coefficient: liver over blood |
PartitionCoefficient |
||
PCSkin |
Partition coefficient: viable skin over blood |
PartitionCoefficient |
||
PCSkin_sc |
Partition coefficient: viable skin / stratum corneum |
PartitionCoefficient |
||
ResampledPCFat |
Resampled value PCFat |
PartitionCoefficient |
PBK model chlorpyrifos (v1)
PBK model chlorpyrifos (v1)
Model aliases: PBK_Chlorpyrifos_V1.
| Id | Description | Unit |
|---|---|---|
Oral |
Oral exposure |
umoles |
| Id | Description | ScalingFactor | MultiplicationFactor | Unit |
|---|---|---|---|---|
O_CV_P |
Concentration in venous blood (parent) |
VVc |
uM |
|
O_CV_M1 |
Concentration in venous blood (metabolite 1) |
VVc |
uM |
|
O_CV_M2 |
Concentration in venous blood (metabolite 2) |
VVc |
uM |
|
O_CP_P |
Concentration in plasma from whole blood (parent) |
VVc |
0.6 |
uM |
O_CP_M1 |
Concentration in plasma from whole blood (metabolite 1) |
VVc |
0.6 |
uM |
O_CP_M2 |
Concentration in plasma from whole blood (metabolite 2) |
VVc |
0.6 |
uM |
O_CU_P |
Concentration in uterus tissue (parent) |
VUc |
uM |
|
O_CU_M1 |
Concentration in uterus tissue (metabolite 1) |
VUc |
uM |
|
O_CU_M2 |
Concentration in uterus tissue (metabolite 2) |
VUc |
uM |
|
O_ACL_P |
Concentration in cleared renally (parent) |
0.03 |
umoles |
|
O_ACL_M1 |
Concentration in cleared renally (metabolite 1) |
0.03 |
umoles |
|
O_ACL_M2 |
Concentration in cleared renally (metabolite 2) |
0.03 |
umoles |
|
O_CS_P |
Concentration in slowly perfused tissue (parent) |
umoles |
||
O_CS_M1 |
Concentration in slowly perfused tissue (metabolite 1) |
umoles |
||
O_CS_M2 |
Concentration in slowly perfused tissue (metabolite 2) |
umoles |
||
O_CR_P |
Concentration in richly perfused tissue (parent) |
umoles |
||
O_CR_M1 |
Concentration in richly perfused tissue (metabolite 1) |
umoles |
||
O_CR_M2 |
Concentration in richly perfused tissue (metabolite 2) |
umoles |
||
O_CF_P |
Concentration in fat (parent) |
VFc |
umoles |
|
O_CF_M1 |
Concentration in fat (metabolite 1) |
VFc |
umoles |
|
O_CF_M2 |
Concentration in fat (metabolite 2) |
VFc |
umoles |
|
O_CL_P |
Concentration in liver (parent) |
VLc |
umoles |
|
O_CL_M1 |
Concentration in liver (metabolite 1) |
VLc |
umoles |
|
O_CL_M2 |
Concentration in liver (metabolite 2) |
VLc |
umoles |
|
O_CK_P |
Concentration in kidney (parent) |
VKc |
umoles |
|
O_CK_M1 |
Concentration in kidney (metabolite 1) |
VKc |
umoles |
|
O_CK_M2 |
Concentration in kidney (metabolite 2) |
VKc |
umoles |
|
O_CM_P |
Concentration in muscle (parent) |
VMc |
umoles |
|
O_CM_M1 |
Concentration in muscle (metabolite 1) |
VMc |
umoles |
|
O_CM_M2 |
Concentration in muscle (metabolite 2) |
VMc |
umoles |
|
O_CH_P |
Concentration in heart (parent) |
VHc |
umoles |
|
O_CH_M1 |
Concentration in heart (metabolite 1) |
VHc |
umoles |
|
O_CH_M2 |
Concentration in heart (metabolite 2) |
VHc |
umoles |
|
O_CLu_P |
Concentration in lung (parent) |
VLuc |
umoles |
|
O_CLu_M1 |
Concentration in lung (metabolite 1) |
VLuc |
umoles |
|
O_CLu_M2 |
Concentration in lung (metabolite 2) |
VLuc |
umoles |
|
O_CBrb_P |
Concentration in brain blood (parent) |
VBrc |
0.05 |
umoles |
O_CBrb_M1 |
Concentration in brain blood (metabolite 1) |
VBrc |
0.05 |
umoles |
O_CBrb_M2 |
Concentration in brain blood (metabolite 2) |
VBrc |
0.05 |
umoles |
O_CBrbt_P |
Concentration in brain tissue (parent) |
VBrc |
0.95 |
umoles |
O_CBrbt_M1 |
Concentration in brain tissue (metabolite 1) |
VBrc |
0.95 |
umoles |
O_CBrbt_M2 |
Concentration in brain tissue (metabolite 2) |
VBrc |
0.95 |
umoles |
O_CBr_P |
Concentration in brain total (parent) |
VBrc |
umoles |
|
O_CBr_M1 |
Concentration in brain total (metabolite 1) |
VBrc |
umoles |
|
O_CBr_M2 |
Concentration in brain total (metabolite 2) |
VBrc |
umoles |
|
O_CA_P |
Concentration in arterial blood (parent) |
VAc |
umoles |
|
O_CA_M1 |
Concentration in arterial blood (metabolite 1) |
VAc |
umoles |
|
O_CA_M2 |
Concentration in arterial blood (metabolite 2) |
VAc |
umoles |
| Id | Description | Default | Unit | Type |
|---|---|---|---|---|
VLc |
Fraction liver tissue of BW |
0.0257 |
Physiological |
|
VFc |
Fraction fat tissue of BW |
0.2142 |
Physiological |
|
VLuc |
Fraction lung tissue of BW |
0.0076 |
Physiological |
|
VAc |
Fraction arterial blood of BW (0.074*1/4) |
0.0198 |
Physiological |
|
VVc |
Fraction venous blood of BW (0.074*3/4) |
0.0593 |
Physiological |
|
VKc |
Fraction kidney tissue of BW |
0.004 |
Physiological |
|
VMc |
Fraction muscle tissue of BW |
0.04 |
Physiological |
|
VUc |
Fraction uterus tissue of BW |
0.0018 |
Physiological |
|
VBrc |
Fraction brain tissue of BW |
0.02 |
Physiological |
|
VHc |
Fraction heart tissue of BW |
0.0047 |
Physiological |
|
QLc |
Fraction of blood flow to liver |
0.227 |
Physiological |
|
QFc |
Fraction of blood flow to fat |
0.052 |
Physiological |
|
QKc |
Fraction of blood flow to kidneys |
0.175 |
Physiological |
|
QMc |
Fraction of blood flow to muscle |
0.12 |
Physiological |
|
QUc |
Fraction of blood flow to uterus |
0.2 |
Physiological |
|
QBrc |
Fraction of blood flow to brain |
0.114 |
Physiological |
|
QHc |
Fraction of blood flow to heart |
0.04 |
Physiological |
|
MWP |
Molecular weight parent |
350.59 |
g/mol |
Physicochemical |
MWM1 |
Molecular weight metabolite 1 |
334.52 |
g/mol |
Physicochemical |
MWM2 |
Molecular weight metabolite 2 |
198.43 |
g/mol |
Physicochemical |
LogPP |
Octanol/water partition coefficient parent |
4.784 |
PartitionCoefficient |
|
LogPM1 |
Octanol/water partition coefficient metabolite 1 |
3.894 |
PartitionCoefficient |
|
LogPM2 |
Octanol/water partition coefficient metabolite 2 |
1.856 |
PartitionCoefficient |
|
Fa |
Fraction absorbed. Obtained from Nolan 1984 |
0.7 |
Physicochemical |
|
KaS |
Absorption constant stomach. Obtained from Timchalk et al. 2002 (stomach; /h) |
0.00000733 |
/h |
Physicochemical |
KaI |
Absorption constant intestine. Obtained from Timchalk et al. 2002 (intestine; /h) |
1.00033 |
/h |
Physicochemical |
KsI |
Absorption constant (transfer stomach to intestine). Obtained from Timchalk et al. 2002 (transfer stomach to intestine; /h) |
0.967749 |
/h |
Physicochemical |
fuP |
Unbound fraction in plasma (parent) |
0.021 |
Physicochemical |
|
fuM1 |
Unbound fraction in plasma (metabolite 1) |
0.15 |
Physicochemical |
|
fuM2 |
Unbound fraction in plasma (metabolite 2) |
0.082 |
Physicochemical |
|
BPP |
B/P ratio (parent) |
1.3 |
Physicochemical |
|
BPM1 |
B/P (metabolite 1) |
2.7 |
Physicochemical |
|
BPM2 |
B/P (metabolite 2) |
1 |
Physicochemical |
|
KurineP |
Urinary excretion rate constant parent |
0 |
/h |
Physicochemical |
KurineM1 |
Urinary excretion rate constant metabolite 1 |
0 |
/h |
Physicochemical |
KurineM2 |
Urinary excretion rate constant metabolite 2 |
0.026 |
/h |
Physicochemical |
CYPabundanceCYP1A2 |
CYP1A2 abundance (pmolCYP/mg protein) |
52 |
Physicochemical |
|
CYPabundanceCYP2B6 |
CYP2B6 abundance (pmolCYP/mg protein) |
15.8 |
Physicochemical |
|
CYPabundanceCYP2C19 |
CYP2C19 abundance (pmolCYP/mg protein) |
5.4 |
Physicochemical |
|
CYPabundanceCYP3A4 |
CYP3A4 abundance (pmolCYP/mg protein) |
137 |
Physicochemical |
|
ISEFCYP1A2 |
Scaling factor CYP1A2 ISEF (Vmax) (non compound-specific) |
0.072 |
Physicochemical |
|
ISEFCYP2B6 |
Scaling factor CYP2B6 ISEF (Vmax) (non compound-specific) |
0.476 |
Physicochemical |
|
ISEFCYP2C19 |
Scaling factor CYP2C19 ISEF (Vmax) (non compound-specific) |
0.209 |
Physicochemical |
|
ISEFCYP3A4 |
Scaling factor CYP3A4 ISEF (Vmax) (non compound-specific) |
0.107 |
Physicochemical |
|
MPL |
Scaling factor of human liver microsome in mg to gram liver (mg microsomal protein /g liver) (Al-Malahmeh, A. J et al., 2017) (Barter et al., 2007) |
32 |
mg/g |
Physicochemical |
VMaxCYP1A2mP1 |
Vmax of CYP1A2 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
3.963 |
Physicochemical |
|
VMaxCYP2B6mP1 |
Vmax of CYP2B6 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
7.755 |
Physicochemical |
|
VMaxCYP2C19mP1 |
Vmax of CYP2C19 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
2.744 |
Physicochemical |
|
VMaxCYP3A4mP1 |
Vmax of CYP3A4 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
17.78 |
Physicochemical |
|
KmCYP1A2P1 |
Affinity constant of CYP1A2 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
0.61 |
umoles/L |
Physicochemical |
KmCYP2B6P1 |
Affinity constant of CYP2B6 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
0.14 |
umoles/L |
Physicochemical |
KmCYP2C19P1 |
Affinity constant of CYP2C19 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
1.89 |
umoles/L |
Physicochemical |
KmCYP3A4P1 |
Affinity constant of CYP3A4 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
29.77 |
umoles/L |
Physicochemical |
VMaxCYP1A2mP2 |
Vmax of CYP1A2 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
2.957 |
Physicochemical |
|
VMaxCYP2B6mP2 |
Vmax of CYP2B6 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
5.492 |
Physicochemical |
|
VMaxCYP2C19mP2 |
Vmax of CYP2C19 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
17.51 |
Physicochemical |
|
VMaxCYP3A4mP2 |
Vmax of CYP3A4 at supersome level (pmol/min/pmol CYP) (Experimentally determined using supersomes, Chen et al., 2022) |
23.86 |
Physicochemical |
|
KmCYP1A2P2 |
Affinity constant of CYP1A2 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
1.25 |
umoles/L |
Physicochemical |
KmCYP2B6P2 |
Affinity constant of CYP2B6 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
1.28 |
umoles/L |
Physicochemical |
KmCYP2C19P2 |
Affinity constant of CYP2C19 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
1.37 |
umoles/L |
Physicochemical |
KmCYP3A4P2 |
Affinity constant of CYP3A4 (umoles/L) (Experimentally determined using supersomes, Chen et al., 2022) |
18.13 |
umoles/L |
Physicochemical |
VMax3c |
Maximum velocity constant (nmol/min/ml plasma) (Experimentally determined using microsomes, Chen et al., 2022) |
37.98 |
nmoles/min/ml |
Physicochemical |
Km3 |
Affinity constant (umoles/L) (Experimentally determined) |
627.9 |
Physicochemical |
|
VMax4c |
Maximum velocity constant (nmol/min/ml plasma) (Experimentally determined using microsomes, Chen et al., 2022) |
1844 |
nmoles/min/ml |
Physicochemical |
Km4 |
Affinity constant (umoles/L) (Experimentally determined) |
289.8 |
umoles/L |
Physicochemical |
BW |
70 |
kg |
BodyWeight |